Virtual Journal of Biological Physics Research -- January 1, 2012

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REVIEW ARTICLES

Cancer immunotherapy comes of age
Ira Mellman, George Coukos, and Glenn Dranoff
Nature   480, 480-489 (2011)   
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QUANTUM MECHANICAL DYNAMICS

Communication: Quantum polarized fluctuating charge model: A practical method to include ligand polarizability in biomolecular simulations
S. Roy Kimura, Ramkumar Rajamani, and David R. Langley
The Journal of Chemical Physics   135, 231101 (2011) (4 pages)   
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Color modeling of protein optical probes
N. Arul Murugan, Jacob Kongsted, Zilvinas Rinkevicius, and Hans Ågren
Physical Chemistry Chemical Physics   14, 1107-1112 (2012)   
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Direct evidence of quantum transport in photosynthetic light-harvesting complexes
Gitt Panitchayangkoon, Dmitri V. Voronine, Darius Abramavicius, Justin R. Caram, Nicholas H. C. Lewis, Shaul Mukamel, and Gregory S. Engel
Proceedings of the National Academy of Sciences of the United States of America   108, 20908-20912 (2011)   
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PHYSICS OF WATER AND HYDROGEN-BONDED SOLVENTS

A two-dimensional-reference interaction site model theory for solvation structure near solid-liquid interface
Kenji Iida and Hirofumi Sato
The Journal of Chemical Physics   135, 244702 (2011) (6 pages)   
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Conformational fluctuations of a protein–DNA complex and the structure and ordering of water around it
Sudipta Kumar Sinha and Sanjoy Bandyopadhyay
The Journal of Chemical Physics   135, 245104 (2011) (10 pages)   
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Increase of both Order and Disorder in the First Hydration Shell with Increasing Solute Polarity
Aljaž Godec, Jeremy C. Smith, and Franci Merzel
Physical Review Letters   107, 267801 (2011) (5 pages)   
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Computing the energy of a water molecule using multideterminants: A simple, efficient algorithm
Bryan K. Clark, Miguel A. Morales, Jeremy McMinis, Jeongnim Kim, and Gustavo E. Scuseria
The Journal of Chemical Physics   135, 244105 (2011) (9 pages)   
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On a relationship between molecular polarizability and partial molar volume in water
Ekaterina L. Ratkova and Maxim V. Fedorov
The Journal of Chemical Physics   135, 244109 (2011) (5 pages)   
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A molecular dynamics study of water nucleation using the TIP4P/2005 model
Alejandro Pérez and Angel Rubio
The Journal of Chemical Physics   135, 244505 (2011) (13 pages)   
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Multiple time scale molecular dynamics for fluids with orientational degrees of freedom. II. Canonical and isokinetic ensembles
Igor P. Omelyan and Andriy Kovalenko
The Journal of Chemical Physics   135, 234107 (2011) (12 pages)   
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Energy relaxation of intermolecular motions in supercooled water and ice: A molecular dynamics study
Takuma Yagasaki and Shinji Saito
The Journal of Chemical Physics   135, 244511 (2011) (9 pages)   
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MEMBRANE BIOPHYSICS

Hydrogen-bonded multilayers of micelles of a dually responsive dicationic block copolymer
Irem Erel, H. Enis Karahan, Cansel Tuncer, Vural Bütün, and A. Levent Demirel
Soft Matter   8, 827-836 (2012)   
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Boundary-induced orientation of dynamic filament networks and vesicle agglomerations
Philip Greulich and Ludger Santen
Physical Review E   84, 060902 (2011) (4 pages)   
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Curvature multiphase field model for phase separation on a membrane
C. Varea, R. A. Barrio, and A. Hernández-Machado
Physical Review E   84, 061922 (2011) (5 pages)   
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Alternatively spliced domains interact to regulate BK potassium channel gating
Brandon E. Johnson, Dominique A. Glauser, Elise S. Dan-Glauser, D. Brent Halling, Richard W. Aldrich, and Miriam B. Goodman
Proceedings of the National Academy of Sciences of the United States of America   108, 20784-20789 (2011)   
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Gating of the MlotiK1 potassium channel involves large rearrangements of the cyclic nucleotide-binding domains
Stefania A. Mari, João Pessoa, Stephen Altieri, Ulf Hensen, Lise Thomas, João H. Morais-Cabral, and Daniel J. Müller
Proceedings of the National Academy of Sciences of the United States of America   108, 20802-20807 (2011)   
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Thermal fluctuations in shape, thickness, and molecular orientation in lipid bilayers
Max C. Watson, Evgeni S. Penev, Paul M. Welch, and Frank L. H. Brown
The Journal of Chemical Physics   135, 244701 (2011) (22 pages)   
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Membrane mediated regulation in free peptides of HIV-1 gp41: minimal modulation of the hemifusion phase
Eleonora Cerasoli, Jascindra Ravi, Craig Gregor, Rohanah Hussain, Giuliano Siligardi, Glenn Martyna, Jason Crain, and Maxim G. Ryadnov
Physical Chemistry Chemical Physics   14, 1277-1285 (2012)   
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Computer simulations of fusion, fission and shape deformation in lipid membranes
Kai Yang and Yu-qiang Ma
Soft Matter   8, 606-618 (2012)   
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Characterization of cholesterol-depleted or -restored cell membranes by depth-sensing nano-indentation
Yun-Ta Yang, Jiunn-Der Liao, Chou-Ching K. Lin, Cheng-Tao Chang, Shyh-Hau Wang, and Ming-Shaung Ju
Soft Matter   8, 682-687 (2012)   
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Perforin activity at membranes leads to invaginations and vesicle formation
Tilen Praper, Andreas F.-P. Sonnen, Aleš Kladnik, Alberto O. Andrighetti, Gabriella Viero, Keith J. Morris, Emanuela Volpi, Lorenzo Lunelli, Mauro Dalla Serra, Christopher J. Froelich, Robert J. C. Gilbert, and Gregor Anderluh
Proceedings of the National Academy of Sciences of the United States of America   108, 21016-21021 (2011)   
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Adsorption and self-assembly of biosurfactants studied by neutron reflectivity and small angle neutron scattering: glycolipids, lipopeptides and proteins
Jeffrey Penfold, Robert K Thomas, and Hsin-Hui Shen
Soft Matter   8, 578-591 (2012)   
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FUNDAMENTAL POLYMER STATICS/DYNAMICS

Free Energy of Multiple Overlapping Chains
Katherine Klymko and Angelo Cacciuto
Physical Review Letters   107, 278302 (2011) (5 pages)   
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Free energy of alternating two-component polymer brushes on cylindrical templates
William L. Miller, Behnaz Bozorgui, Katherine Klymko, and Angelo Cacciuto
The Journal of Chemical Physics   135, 244902 (2011) (5 pages)   
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First-principles simulations of exciton diffusion in organic semiconductors
Xu Zhang, Zi Li, and Gang Lu
Physical Review B   84, 235208 (2011) (8 pages)   
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Effects of chain stiffness and salt concentration on responses of polyelectrolyte brushes under external electric field
Qianqian Cao, Chuncheng Zuo, Lujuan Li, and Guang Yan
Biomicrofluidics   5, 044119 (2011) (12 pages)   
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Four-dimensional structural dynamics of sheared collagen networks
Richard C. Arevalo, Jeffrey S. Urbach, and Daniel L. Blair
Chaos   21, 041102 (2011) (1 page)   
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Percolation, phase separation, and gelation in fluids and mixtures of spheres and rods
Ryan Jadrich and Kenneth S. Schweizer
The Journal of Chemical Physics   135, 234902 (2011) (12 pages)   
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PROTEIN CONFORMATIONAL DYNAMICS/FOLDING

Structures of the multidrug exporter AcrB reveal a proximal multisite drug-binding pocket
Ryosuke Nakashima, Keisuke Sakurai, Seiji Yamasaki, Kunihiko Nishino, and Akihito Yamaguchi
Nature   480, 565-569 (2011)   
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Universal geometrical factor of protein conformations as a consequence of energy minimization
Ming-Chya Wu, Mai Li, Wen-Jong Ma, Maksim Kouza, and Chin-Kun Hu
Europhysics Letters   96, 68005- (2011)   
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RNA–protein binding interface in the telomerase ribonucleoprotein
Christopher J. Bley, Xiaodong Qi, Dustin P. Rand, Chad R. Borges, Randall W. Nelson, and Julian J.-L. Chen
Proceedings of the National Academy of Sciences of the United States of America   108, 20333-20338 (2011)   
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Solvent and conformation dependence of amide I vibrations in peptides and proteins containing proline
Santanu Roy, Joshua Lessing, Georg Meisl, Ziad Ganim, Andrei Tokmakoff, Jasper Knoester, and Thomas L. C. Jansen
The Journal of Chemical Physics   135, 234507 (2011) (11 pages)   
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Denaturation of proteins near polar surfaces
Anna Starzyk and Marek Cieplak
The Journal of Chemical Physics   135, 235103 (2011) (10 pages)   
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Structure change of -hairpin induced by turn optimization: An enhanced sampling molecular dynamics simulation study
Qiang Shao, Lijiang Yang, and Yi Qin Gao
The Journal of Chemical Physics   135, 235104 (2011) (10 pages)   
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Multiple molecular architectures of the eye lens chaperone B-crystallin elucidated by a triple hybrid approach
Nathalie Braun, Martin Zacharias, Jirka Peschek, Andreas Kastenmüller, Juan Zou, Marianne Hanzlik, Martin Haslbeck, Juri Rappsilber, Johannes Buchner, and Sevil Weinkauf
Proceedings of the National Academy of Sciences of the United States of America   108, 20491-20496 (2011)   
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Protein dynamical transition at 110 K
Chae Un Kim, Mark W. Tate, and Sol M. Gruner
Proceedings of the National Academy of Sciences of the United States of America   108, 20897-20901 (2011)   
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Protein conformational dynamics in the mechanism of HIV-1 protease catalysis
Vladimir Yu. Torbeev, H. Raghuraman, Donald Hamelberg, Marco Tonelli, William M. Westler, Eduardo Perozo, and Stephen B. H. Kent
Proceedings of the National Academy of Sciences of the United States of America   108, 20982-20987 (2011)   
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Experimental free energy surfaces reveal the mechanisms of maintenance of protein solubility
Alfonso De Simone, Anne Dhulesia, Gemma Soldi, Michele Vendruscolo, Shang-Te Danny Hsu, Fabrizio Chiti, and Christopher M. Dobson
Proceedings of the National Academy of Sciences of the United States of America   108, 21057-21062 (2011)   
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Transition network based on equilibrium sampling: A new method for extracting kinetic information from Monte Carlo simulations of protein folding
Konstantin V. Klenin and Wolfgang Wenzel
The Journal of Chemical Physics   135, 235105 (2011) (10 pages)   
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Preferential solvation of lysozyme in water/ethanol mixtures
Maria Grazia Ortore, Paolo Mariani, Flavio Carsughi, Stefania Cinelli, Giuseppe Onori, José Teixeira, and Francesco Spinozzi
The Journal of Chemical Physics   135, 245103 (2011) (9 pages)   
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Modeling of relay helix functional dynamics and feasibility of experimental verification by neutron scattering
Miljko V. Satarić, Slobodan Zdravković, and Jack A. Tuszyński
Chaos   21, 043135 (2011) (8 pages)   
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Radiation damage in protein serial femtosecond crystallography using an x-ray free-electron laser
Lukas Lomb, Thomas R. M. Barends, Stephan Kassemeyer, Andrew Aquila, Sascha W. Epp, Benjamin Erk, Lutz Foucar, Robert Hartmann, Benedikt Rudek, Daniel Rolles, Artem Rudenko, Robert L. Shoeman, Jakob Andreasson, Sasa Bajt, Miriam Barthelmess, Anton Barty, Michael J. Bogan, Christoph Bostedt, John D. Bozek, Carl Caleman, Ryan Coffee, Nicola Coppola, Daniel P. DePonte, R. Bruce Doak, Tomas Ekeberg, Holger Fleckenstein, Petra Fromme, Maike Gebhardt, Heinz Graafsma, Lars Gumprecht, Christina Y. Hampton, Andreas Hartmann, Günter Hauser, Helmut Hirsemann, Peter Holl, James M. Holton, Mark S. Hunter, Wolfgang Kabsch, Nils Kimmel, Richard A. Kirian, Mengning Liang, Filipe R. N. C. Maia, Anton Meinhart, Stefano Marchesini, Andrew V. Martin, Karol Nass, Christian Reich, Joachim Schulz, M. Marvin Seibert, Raymond Sierra, Heike Soltau, John C. H. Spence, Jan Steinbrener, Francesco Stellato, Stephan Stern, Nicusor Timneanu, Xiaoyu Wang, Georg Weidenspointner, Uwe Weierstall, Thomas A. White, Cornelia Wunderer, Henry N. Chapman, Joachim Ullrich, Lothar Strüder, and Ilme Schlichting
Physical Review B   84, 214111 (2011) (6 pages)   
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The Ribosome Modulates Nascent Protein Folding
Christian M. Kaiser, Daniel H. Goldman, John D. Chodera, Ignacio Tinoco, Jr., and Carlos Bustamante
Science   334, 1723-1727 (2011)   
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GlcNAcylation of histone H2B facilitates its monoubiquitination
Ryoji Fujiki, Waka Hashiba, Hiroki Sekine, Atsushi Yokoyama, Toshihiro Chikanishi, Saya Ito, Yuuki Imai, Jaehoon Kim, Housheng Hansen He, Katsuhide Igarashi, Jun Kanno, Fumiaki Ohtake, Hirochika Kitagawa, Robert G. Roeder, Myles Brown, and Shigeaki Kato
Nature   480, 557-560 (2011)   
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Retraction for Dougan et al., Solvent molecules bridge the mechanical unfolding transition state of a protein

Proceedings of the National Academy of Sciences of the United States of America   108, 20850 (2011)   
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The unfolded protein response supports cellular robustness as a broad-spectrum compensatory pathway
Guillaume Thibault, Nurzian Ismail, and Davis T. W. Ng
Proceedings of the National Academy of Sciences of the United States of America   108, 20597-20602 (2011)   
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DNA CONFORMATIONAL DYNAMICS

Kinetic Monte Carlo method applied to nucleic acid hairpin folding
Ben Sauerwine and Michael Widom
Physical Review E   84, 061912 (2011) (8 pages)   
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Mean bubble formation time in DNA denaturation
K. Murthy and G. Schtz
Europhysics Letters   96, 68003- (2011)   
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Gel electrophoresis of linear and star-branched DNA
Henry W. Lau and Lynden A. Archer
Physical Review E   84, 061916 (2011) (7 pages)   
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Dynamic metabolic labeling of DNA in vivo with arabinosyl nucleosides
Anne B. Neef and Nathan W. Luedtke
Proceedings of the National Academy of Sciences of the United States of America   108, 20404-20409 (2011)   
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Controlling the conformations and transport of DNA by free energy landscaping
Elijah Shelton, Zhijun Jiang, Shutong Wang, and Derek Stein
Applied Physics Letters   99, 263112 (2011) (3 pages)   
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Finite-enthalpy model parameters from DNA melting temperatures
G. Weber
Europhysics Letters   96, 68001- (2011)   
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High salt and DNA double-strand breaks
Christophe E. Redon and William M. Bonner
Proceedings of the National Academy of Sciences of the United States of America   108, 20281-20282 (2011)   
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How a DNA Polymerase Clamp Loader Opens a Sliding Clamp
Brian A. Kelch, Debora L. Makino, Mike O'Donnell, and John Kuriyan
Science   334, 1675-1680 (2011)   
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The restoration of DNA structures by the dry–wet method
Junwye Lee, Rashid Amin, Byeonghoon Kim, Sang Jung Ahn, Keun Woo Lee, Hyun Jae Kim, and Sung Ha Park
Soft Matter   8, 619-622 (2012)   
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Cotranscriptional folding kinetics of ribonucleic acid secondary structures
Peinan Zhao, Wenbing Zhang, and Shi-Jie Chen
The Journal of Chemical Physics   135, 245101 (2011) (10 pages)   
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DNA end processing by polynucleotide kinase/phosphatase
Matthew J. Schellenberg and R. Scott Williams
Proceedings of the National Academy of Sciences of the United States of America   108, 20855-20856 (2011)   
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The DNA three-way junction as a mould for tripartite chromophore assembly
Markus Probst, Daniel Wenger, Sarah M. Biner, and Robert Häner
Organic and Biomolecular Chemistry   10, 755-759 (2012)   
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An enumerative stepwise ansatz enables atomic-accuracy RNA loop modeling
Parin Sripakdeevong, Wipapat Kladwang, and Rhiju Das
Proceedings of the National Academy of Sciences of the United States of America   108, 20573-20578 (2011)   
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SINGLE MOLECULE DYNAMICS

Functional importance of telomerase pseudoknot revealed by single-molecule analysis
Mariana Mihalusova, John Y. Wu, and Xiaowei Zhuang
Proceedings of the National Academy of Sciences of the United States of America   108, 20339-20344 (2011)   
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Bleaching/blinking assisted localization microscopy for superresolution imaging using standard fluorescent molecules
Dylan T. Burnette, Prabuddha Sengupta, Yuhai Dai, Jennifer Lippincott-Schwartz, and Bechara Kachar
Proceedings of the National Academy of Sciences of the United States of America   108, 21081-21086 (2011)   
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Numerically exact, time-dependent treatment of vibrationally coupled electron transport in single-molecule junctions
Haobin Wang, Ivan Pshenichnyuk, Rainer Härtle, and Michael Thoss
The Journal of Chemical Physics   135, 244506 (2011) (13 pages)   
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INTERMOLECULAR INTERACTIONS

The role of entropy in initializing the aggregation of peptides: a first principle study on oligopeptide oligomerization
Gábor Pohl, Imre Jákli, Imre G. Csizmadia, Dóra Papp, Garibotto Francisco Matías, and András Perczel
Physical Chemistry Chemical Physics   14, 1507-1516 (2012)   
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Telomerase regulatory subunit Est3 in two Candida species physically interacts with the TEN domain of TERT and telomeric DNA
Wei-Feng Yen, Lidia Chico, Ming Lei, and Neal F. Lue
Proceedings of the National Academy of Sciences of the United States of America   108, 20370-20375 (2011)   
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A statistical mechanical approach to protein aggregation
John S. Schreck and Jian-Min Yuan
The Journal of Chemical Physics   135, 235102 (2011) (12 pages)   
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Systematic control of protein interactions for systems biology
Nitin Bhardwaj, Declan Clarke, and Mark Gerstein
Proceedings of the National Academy of Sciences of the United States of America   108, 20279-20280 (2011)   
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PHYSICAL STUDIES OF CELL MECHANICS

Remodeling of actin filaments by ADF/cofilin proteins
Vitold E. Galkin, Albina Orlova, Dmitri S. Kudryashov, Alexander Solodukhin, Emil Reisler, Gunnar F. Schröder, and Edward H. Egelman
Proceedings of the National Academy of Sciences of the United States of America   108, 20568-20572 (2011)   
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Cell Motility Resulting from Spontaneous Polymerization Waves
K. Doubrovinski and K. Kruse
Physical Review Letters   107, 258103 (2011) (5 pages)   
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Early integrin binding to Arg-Gly-Asp peptide activates actin polymerization and contractile movement that stimulates outward translocation
Cheng-han Yu, Jaslyn Bee Khuan Law, Mona Suryana, Hong Yee Low, and Michael P. Sheetz
Proceedings of the National Academy of Sciences of the United States of America   108, 20585-20590 (2011)   
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Forces and Torques on Rotating Spirochete Flagella
Jing Yang, Greg Huber, and Charles W. Wolgemuth
Physical Review Letters   107, 268101 (2011) (4 pages)   
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Actin disassembly clock determines shape and speed of lamellipodial fragments
Noa Ofer, Alexander Mogilner, and Kinneret Keren
Proceedings of the National Academy of Sciences of the United States of America   108, 20394-20399 (2011)   
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Asymmetry of red blood cell motions in a microchannel with a diverging and converging bifurcation
Vladimir Leble, Rui Lima, Ricardo Dias, Carla Fernandes, Takuji Ishikawa, Yohsuke Imai, and Takami Yamaguchi
Biomicrofluidics   5, 044120 (2011) (15 pages)   
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Testing resonating vector strength: Auditory system, electric fish, and noise
J. Leo van Hemmen, André Longtin, and Andreas N. Vollmayr
Chaos   21, 047508 (2011) (10 pages)   
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Structural interconversions modulate activity of Escherichia coli ribonucleotide reductase
Nozomi Ando, Edward J. Brignole, Christina M. Zimanyi, Michael A. Funk, Kenichi Yokoyama, Francisco J. Asturias, JoAnne Stubbe, and Catherine L. Drennan
Proceedings of the National Academy of Sciences of the United States of America   108, 21046-21051 (2011)   
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Direct Redox Regulation of F-Actin Assembly and Disassembly by Mical
Ruei-Jiun Hung, Chi W. Pak, and Jonathan R. Terman
Science   334, 1710-1713 (2011)   
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Biomaterial surface modifications can dominate cell–substrate mechanics: the impact of PDMS plasma treatment on a quantitative assay of cell stiffness
G. Bartalena, Y. Loosli, T. Zambelli, and J. G. Snedeker
Soft Matter   8, 673-681 (2012)   
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Stiffness and strength of suture joints in nature
Yaning Li, Christine Ortiz, and Mary C. Boyce
Physical Review E   84, 062904 (2011) (5 pages)   
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INFORMATION TRANSFER IN BIOLOGICAL SYSTEMS

Sensory coding in oscillatory electroreceptors of paddlefish
Alexander B. Neiman and David F. Russell
Chaos   21, 047505 (2011) (14 pages)   
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First passage time distribution of chaperone driven polymer translocation through a nanopore: Homopolymer and heteropolymer cases
Rouhollah Haji Abdolvahab, Ralf Metzler, and Mohammad Reza Ejtehadi
The Journal of Chemical Physics   135, 245102 (2011) (8 pages)   
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Cryptochromes mediate rhythmic repression of the glucocorticoid receptor
Katja A. Lamia, Stephanie J. Papp, Ruth T. Yu, Grant D. Barish, N. Henriette Uhlenhaut, Johan W. Jonker, Michael Downes, and Ronald M. Evans
Nature   480, 552-556 (2011)   
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Mouse B-Type Lamins Are Required for Proper Organogenesis But Not by Embryonic Stem Cells
Youngjo Kim, Alexei A. Sharov, Katie McDole, Melody Cheng, Haiping Hao, Chen-Ming Fan, Nicholas Gaiano, Minoru S. H. Ko, and Yixian Zheng
Science   334, 1706-1710 (2011)   
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Npas4 Regulates a Transcriptional Program in CA3 Required for Contextual Memory Formation
Kartik Ramamoorthi, Robin Fropf, Gabriel M. Belfort, Helen L. Fitzmaurice, Ross M. McKinney, Rachael L. Neve, Tim Otto, and Yingxi Lin
Science   334, 1669-1675 (2011)   
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MULTICELLULAR PHENOMENA

Genesis of two-dimensional patterns in cross-gradient fields
L. M. Pismen and D. S. A. Simakov
Physical Review E   84, 061917 (2011) (10 pages)   
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Velocity-jump models with crowding effects
Katrina K. Treloar, Matthew J. Simpson, and Scott W. McCue
Physical Review E   84, 061920 (2011) (13 pages)   
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Coherence depression in stochastic excitable systems with two-frequency forcing
Na Yu and André Longtin
Chaos   21, 047507 (2011) (11 pages)   
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Fast wandering of slow birds
John Toner
Physical Review E   84, 061913 (2011) (8 pages)   
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A Cultured Greigite-Producing Magnetotactic Bacterium in a Novel Group of Sulfate-Reducing Bacteria
Christopher T. Lefvre, Nicolas Menguy, Fernanda Abreu, Ulysses Lins, Mihly Psfai, Tanya Prozorov, David Pignol, Richard B. Frankel, and Dennis A. Bazylinski
Science   334, 1720-1723 (2011)   
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BIOLOGICAL NETWORKS

Key role of time-delay and connection topology in shaping the dynamics of noisy genetic regulatory networks
X. L. Yang, D. V. Senthilkumar, Z. K. Sun, and J. Kurths
Chaos   21, 047522 (2011) (6 pages)   
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Variability of spatio-temporal patterns in non-homogeneous rings of spiking neurons
Serhiy Yanchuk, Przemyslaw Perlikowski, Oleksandr V. Popovych, and Peter A. Tass
Chaos   21, 047511 (2011) (11 pages)   
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Control of delay-induced oscillation death by coupling phase in coupled oscillators
Wei Zou, Jianquan Lu, Yang Tang, Chengjian Zhang, and Jürgen Kurths
Physical Review E   84, 066208 (2011) (6 pages)   
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Communities, modules and large-scale structure in networks
M. E. J. Newman
Nature Physics   8, 25-31 (2011)   
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Loss of synchronization in complex neuronal networks with delay
J. Lehnert, T. Dahms, P. Hvel, and E. Schll
Europhysics Letters   96, 60013- (2011)   
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Transcriptional proofreading in dense RNA polymerase traffic
Mamata Sahoo and Stefan Klumpp
Europhysics Letters   96, 60004- (2011)   
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QUANTITATIVE GENOMICS

Room-temperature, atmospheric plasma needle reduces adenovirus gene expression in HEK 293A host cells
Z. Xiong, X. Lu, Y. Cao, Q. Ning, K. Ostrikov, Y. Lu, X. Zhou, and J. Liu
Applied Physics Letters   99, 253703 (2011) (3 pages)   
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Scale-free duplication dynamics: A model for ultraduplication
M. V. Koroteev and J. Miller
Physical Review E   84, 061919 (2011) (10 pages)   
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The Medicago genome provides insight into the evolution of rhizobial symbioses
Nevin D. Young, Frdric Debell, Giles E. D. Oldroyd, Rene Geurts, Steven B. Cannon, Michael K. Udvardi, Vagner A. Benedito, Klaus F. X. Mayer, Jrme Gouzy, Heiko Schoof, Yves Van de Peer, Sebastian Proost, Douglas R. Cook, Blake C. Meyers, Manuel Spannagl, Foo Cheung, Stphane De Mita, Vivek Krishnakumar, Heidrun Gundlach, Shiguo Zhou, Joann Mudge, Arvind K. Bharti, Jeremy D. Murray, Marina A. Naoumkina, Benjamin Rosen, Kevin A. T. Silverstein, Haibao Tang, Stephane Rombauts, Patrick X. Zhao, Peng Zhou, Valrie Barbe, Philippe Bardou, Michael Bechner, Arnaud Bellec, Anne Berger, Hlne Bergs, Shelby Bidwell, Ton Bisseling, Nathalie Choisne, Arnaud Couloux, Roxanne Denny, Shweta Deshpande, Xinbin Dai, Jeff J. Doyle, Anne-Marie Dudez, Andrew D. Farmer, Stphanie Fouteau, Carolien Franken, Chrystel Gibelin, John Gish, Steven Goldstein, Alvaro J. Gonzlez, Pamela J. Green, Asis Hallab, Marijke Hartog, Axin Hua, Sean J. Humphray, Dong-Hoon Jeong, Yi Jing, Anika Jcker, Steve M. Kenton, Dong-Jin Kim, Kathrin Klee, Hongshing Lai, Chunting Lang, Shaoping Lin, Simone L. Macmil, Ghislaine Magdelenat, Lucy Matthews, Jamison McCorrison, Erin L. Monaghan, Jeong-Hwan Mun, Fares Z. Najar, Christine Nicholson, Cline Noirot, Majesta OBleness, Charles R. Paule, Julie Poulain, Florent Prion, Baifang Qin, Chunmei Qu, Ernest F. Retzel, Claire Riddle, Erika Sallet, Sylvie Samain, Nicolas Samson, Iryna Sanders, Olivier Saurat, Claude Scarpelli, Thomas Schiex, Batrice Segurens, Andrew J. Severin, D. Janine Sherrier, Ruihua Shi, Sarah Sims, Susan R. Singer, Senjuti Sinharoy, Lieven Sterck, Agns Viollet, Bing-Bing Wang, Keqin Wang, Mingyi Wang, Xiaohong Wang, Jens Warfsmann, Jean Weissenbach, Doug D. White, Jim D. White, Graham B. Wiley, Patrick Wincker, Yanbo Xing, Limei Yang, Ziyun Yao, Fu Ying, Jixian Zhai, Liping Zhou, Antoine Zuber, Jean Dnari, Richard A. Dixon, Gregory D. May, David C. Schwartz, Jane Rogers, Francis Qutier, Christopher D. Town, and Bruce A. Roe
Nature   480, 520-524 (2011)   
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The genomic binding sites of a noncoding RNA
Matthew D. Simon, Charlotte I. Wang, Peter V. Kharchenko, Jason A. West, Brad A. Chapman, Artyom A. Alekseyenko, Mark L. Borowsky, Mitzi I. Kuroda, and Robert E. Kingston
Proceedings of the National Academy of Sciences of the United States of America   108, 20497-20502 (2011)   
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Genome diversity in wild grasses under environmental stress
Timothy L. Fitzgerald, Frances M. Shapter, Stuart McDonald, Daniel L. E. Waters, Ian H. Chivers, Andre Drenth, Eviatar Nevo, and Robert J. Henry
Proceedings of the National Academy of Sciences of the United States of America   108, 21140-21145 (2011)   
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Whole-exome sequencing of neoplastic cysts of the pancreas reveals recurrent mutations in components of ubiquitin-dependent pathways
Jian Wu, Yuchen Jiao, Marco Dal Molin, Anirban Maitra, Roeland F. de Wilde, Laura D. Wood, James R. Eshleman, Michael G. Goggins, Christopher L. Wolfgang, Marcia I. Canto, Richard D. Schulick, Barish H. Edil, Michael A. Choti, Volkan Adsay, David S. Klimstra, G. Johan A. Offerhaus, Alison P. Klein, Levy Kopelovich, Hannah Carter, Rachel Karchin, Peter J. Allen, C. Max Schmidt, Yoshiki Naito, Luis A. Diaz, Kenneth W. Kinzler, Nickolas Papadopoulos, Ralph H. Hruban, and Bert Vogelstein
Proceedings of the National Academy of Sciences of the United States of America   108, 21188-21193 (2011)   
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High-efficiency homologous recombination in the oil-producing alga Nannochloropsis sp.
Oliver Kilian, Christina S. E. Benemann, Krishna K. Niyogi, and Bertrand Vick
Proceedings of the National Academy of Sciences of the United States of America   108, 21265-21269 (2011)   
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Mismatch Repair, But Not Heteroduplex Rejection, Is Temporally Coupled to DNA Replication
Hans Hombauer, Anjana Srivatsan, Christopher D. Putnam, and Richard D. Kolodner
Science   334, 1713-1716 (2011)   
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DNA-binding factors shape the mouse methylome at distal regulatory regions
Michael B. Stadler, Rabih Murr, Lukas Burger, Robert Ivanek, Florian Lienert, Anne Schler, Christiane Wirbelauer, Edward J. Oakeley, Dimos Gaidatzis, Vijay K. Tiwari, and Dirk Schbeler
Nature   480, 490-495 (2011)   
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A widespread class of reverse transcriptase-related cellular genes
Eugene A. Gladyshev and Irina R. Arkhipova
Proceedings of the National Academy of Sciences of the United States of America   108, 20311-20316 (2011)   
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Model-Driven Engineering of RNA Devices to Quantitatively Program Gene Expression
James M. Carothers, Jonathan A. Goler, Darmawi Juminaga, and Jay D. Keasling
Science   334, 1716-1719 (2011)   
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Retrotransposition is associated with genome instability during chronological aging
Patrick H. Maxwell, William C. Burhans, and M. Joan Curcio
Proceedings of the National Academy of Sciences of the United States of America   108, 20376-20381 (2011)   
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DNA double-strand breaks induced by high NaCl occur predominantly in gene deserts
Natalia I. Dmitrieva, Kairong Cui, Daniil A. Kitchaev, Keji Zhao, and Maurice B. Burg
Proceedings of the National Academy of Sciences of the United States of America   108, 20796-20801 (2011)   
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Human monocytes are severely impaired in base and DNA double-strand break repair that renders them vulnerable to oxidative stress
Martina Bauer, Michael Goldstein, Markus Christmann, Huong Becker, Daniel Heylmann, and Bernd Kaina
Proceedings of the National Academy of Sciences of the United States of America   108, 21105-21110 (2011)   
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Erratum: Dynamics of a genetic toggle switch at the nucleotide and codon levels [Phys. Rev. E 84, 031903 (2011)]
Ilya Potapov, Jason Lloyd-Price, Olli Yli-Harja, and Andre S. Ribeiro
Physical Review E   84, 069903 (2011) (1 page)   
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CANCER PHYSICS

Non-Markovian models for migration-proliferation dichotomy of cancer cells: Anomalous switching and spreading rate
Sergei Fedotov, Alexander Iomin, and Lev Ryashko
Physical Review E   84, 061131 (2011) (8 pages)   
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Photoactivated cationic alkyl-substituted porphyrin binding to g4-RNA in the 5-UTR of KRAS oncogene represses translation
Mariangela Faudale, Susanna Cogoi, and Luigi E. Xodo
Chemical Communications   48, 874-876 (2012)   
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Crystal structure of the mucosa-associated lymphoid tissue lymphoma translocation 1 (MALT1) paracaspase region
Jong W. Yu, Philip D. Jeffrey, Jun Yong Ha, Xiaolu Yang, and Yigong Shi
Proceedings of the National Academy of Sciences of the United States of America   108, 21004-21009 (2011)   
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Dielectric barrier discharge plasma in Ar/O₂ promoting apoptosis behavior in A549 cancer cells
Jun Huang, Hui Li, Wei Chen, Guo-Hua Lv, Xing-Quan Wang, Guo-Ping Zhang, Kostya Ostrikov, Peng-Ye Wang, and Si-Ze Yang
Applied Physics Letters   99, 253701 (2011) (3 pages)   
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Fabrication of immunosensor microwell arrays from gold compact discs for detection of cancer biomarker proteins
Chi K. Tang, Abhay Vaze, and James F. Rusling
Lab on a Chip   12, 281-286 (2012)   
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Multiple stromal populations contribute to pulmonary fibrosis without evidence for epithelial to mesenchymal transition
Jason R. Rock, Christina E. Barkauskas, Michael J. Cronce, Yan Xue, Jeffrey R. Harris, Jiurong Liang, Paul W. Noble, and Brigid L. M. Hogan
Proceedings of the National Academy of Sciences of the United States of America   108, E1475-E1483 (2011)   
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Notch1 regulates the expression of the multidrug resistance gene ABCC1/MRP1 in cultured cancer cells
Sungpil Cho, Meiling Lu, Xiaolong He, Pui-Lai Rachel Ee, Uppoor Bhat, Erasmus Schneider, Lucio Miele, and William T. Beck
Proceedings of the National Academy of Sciences of the United States of America   108, 20778-20783 (2011)   
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Molecular basis for the differential use of glucose and glutamine in cell proliferation as revealed by synchronized HeLa cells
Sergio L. Colombo, Miriam Palacios-Callender, Nanci Frakich, Saul Carcamo, Istvan Kovacs, Slavica Tudzarova, and Salvador Moncada
Proceedings of the National Academy of Sciences of the United States of America   108, 21069-21074 (2011)   
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Maintenance of tumor initiating cells of defined genetic composition by nucleostemin
Naoko Okamoto, Mami Yasukawa, Christine Nguyen, Vivi Kasim, Yoshiko Maida, Richard Possemato, Tatsuhiro Shibata, Keith L. Ligon, Kiyoko Fukami, William C. Hahn, and Kenkichi Masutomi
Proceedings of the National Academy of Sciences of the United States of America   108, 20388-20393 (2011)   
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Autoinhibition and phosphorylation-induced activation mechanisms of human cancer and autoimmune disease-related E3 protein Cbl-b
Yoshihiro Kobashigawa, Akira Tomitaka, Hiroyuki Kumeta, Nobuo N. Noda, Masaya Yamaguchi, and Fuyuhiko Inagaki
Proceedings of the National Academy of Sciences of the United States of America   108, 20579-20584 (2011)   
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EVOLUTION PHYSICS

Phase transition in an exactly solvable extinction model
Debarshee Bagchi and P. K. Mohanty
Physical Review E   84, 061921 (2011) (4 pages)   
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Effects of punishment in a mobile population playing the prisoner's dilemma game
Daniel R. Amor and Joaquim Fort
Physical Review E   84, 066115 (2011) (10 pages)   
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Cooperation, structure, and hierarchy in multiadaptive games
Sungmin Lee, Petter Holme, and Zhi-Xi Wu
Physical Review E   84, 061148 (2011) (10 pages)   
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Rational design of an evolutionary precursor of glutaminyl-tRNA synthetase
Patrick O'Donoghue, Kelly Sheppard, Osamu Nureki, and Dieter Söll
Proceedings of the National Academy of Sciences of the United States of America   108, 20485-20490 (2011)   
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Local adaptation of an introduced transgenic insect fungal pathogen due to new beneficial mutations
Sibao Wang, Tammatha R. O'Brien, Monica Pava-Ripoll, and Raymond J. St. Leger
Proceedings of the National Academy of Sciences of the United States of America   108, 20449-20454 (2011)   
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STATISTICAL AND NONLINEAR PHYSICS

Exact on-lattice stochastic reaction-diffusion simulations using partial-propensity methods
Rajesh Ramaswamy and Ivo F. Sbalzarini
The Journal of Chemical Physics   135, 244103 (2011) (17 pages)   
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Logical stochastic resonance with correlated internal and external noises in a synthetic biological logic block
Anna Dari, Behnam Kia, Adi R. Bulsara, and William L. Ditto
Chaos   21, 047521 (2011) (8 pages)   
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Stochastic resonance on a modular neuronal network of small-world subnetworks with a subthreshold pacemaker
Haitao Yu, Jiang Wang, Chen Liu, Bin Deng, and Xile Wei
Chaos   21, 047502 (2011) (9 pages)   
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Nonlinear dynamics of skin potentials in the electrosensory paddlefish
Michael H. Hofmann and Lon A. Wilkens
Chaos   21, 047504 (2011) (7 pages)   
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A common repressor pool results in indeterminacy of extrinsic noise
Michail Stamatakis, Rhys M. Adams, and Gábor Balázsi
Chaos   21, 047523 (2011) (12 pages)   
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Dynamic model of flexible phytoplankton nutrient uptake
Juan A. Bonachela, Michael Raghib, and Simon A. Levin
Proceedings of the National Academy of Sciences of the United States of America   108, 20633-20638 (2011)   
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Deionization shocks in microstructures
Ali Mani and Martin Z. Bazant
Physical Review E   84, 061504 (2011) (13 pages)   
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Pulmonary diffusional screening and the scaling laws of mammalian metabolic rates
Chen Hou and Michael Mayo
Physical Review E   84, 061915 (2011) (6 pages)   
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Multivariate multiscale entropy: A tool for complexity analysis of multichannel data
Mosabber Uddin Ahmed and Danilo P. Mandic
Physical Review E   84, 061918 (2011) (10 pages)   
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Eikonal-based initiation of fibrillatory activity in thin-walled cardiac propagation models
Antoine Herlin and Vincent Jacquemet
Chaos   21, 043136 (2011) (9 pages)   
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Synchronization analysis of voltage-sensitive dye imaging during focal seizures in the rat neocortex
Daisuke Takeshita and Sonya Bahar
Chaos   21, 047506 (2011) (9 pages)   
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Noise-induced precursors of tonic-to-bursting transitions in hypothalamic neurons and in a conductance-based model
Hans A. Braun, Justus Schwabedal, Mathias Dewald, Christian Finke, Svetlana Postnova, Martin T. Huber, Bastian Wollweber, Horst Schneider, Martin C. Hirsch, Karlheinz Voigt, Ulrike Feudel, and Frank Moss
Chaos   21, 047509 (2011) (12 pages)   
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Correlation transfer in stochastically driven neural oscillators over long and short time scales
Aushra Abouzeid and Bard Ermentrout
Physical Review E   84, 061914 (2011) (9 pages)   
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Unstable periodic orbits and noise in chaos computing
Behnam Kia, Anna Dari, William L. Ditto, and Mark L. Spano
Chaos   21, 047520 (2011) (9 pages)   
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Simulations of driven and reconstituting lattice gases
M. D. Grynberg
Physical Review E   84, 061145 (2011) (10 pages)   
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Tweedie convergence: A mathematical basis for Taylor's power law, 1/f noise, and multifractality
Wayne S. Kendal and Bent Jørgensen
Physical Review E   84, 066120 (2011) (10 pages)   
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Continuous-time random walks that alter environmental transport properties
C. Angstmann and B. I. Henry
Physical Review E   84, 061146 (2011) (8 pages)   
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Vulnerability to paroxysmal oscillations in delayed neural networks: A basis for nocturnal frontal lobe epilepsy?
Austin Quan, Ivan Osorio, Toru Ohira, and John Milton
Chaos   21, 047512 (2011) (9 pages)   
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Architecture of human telomerase RNA
Qi Zhang, Nak-Kyoon Kim, and Juli Feigon
Proceedings of the National Academy of Sciences of the United States of America   108, 20325-20332 (2011)   
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State-dependent doubly weighted stochastic simulation algorithm for automatic characterization of stochastic biochemical rare events
Min K. Roh, Bernie J. Daigle, Jr., Dan T. Gillespie, and Linda R. Petzold
The Journal of Chemical Physics   135, 234108 (2011) (11 pages)   
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Energy landscape of the reactions governing the Na⁺ deeply occluded state of the Na⁺/K⁺-ATPase in the giant axon of the Humboldt squid
Juan P. Castillo, Daniela De Giorgis, Daniel Basilio, David C. Gadsby, Joshua J. C. Rosenthal, Ramon Latorre, Miguel Holmgren, and Francisco Bezanilla
Proceedings of the National Academy of Sciences of the United States of America   108, 20556-20561 (2011)   
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Erratum: Self-organized criticality as Witten-type topological field theory with spontaneously broken Becchi-Rouet-Stora-Tyutin symmetry [Phys. Rev. E 83, 051129 (2011)]
Igor V. Ovchinnikov
Physical Review E   84, 069904 (2011) (1 page)   
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INSTRUMENTATION DEVELOPMENT

Evaluation of bladder microvasculature with high-resolution photoacoustic imaging
Zhixing Xie, William Roberts, Paul Carson, Xiaojun Liu, Chao Tao, and Xueding Wang
Optics Letters   36, 4815-4817 (2011)   
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Growth propagation of yeast in linear arrays of microfluidic chambers over many generations
Li Wang, Jiaji Liu, Xin Li, Jian Shi, Jie Hu, Ran Cui, Zhi-Ling Zhang, Dai-Wen Pang, and Yong Chen
Biomicrofluidics   5, 044118 (2011) (9 pages)   
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Background-Free Nonlinear Microspectroscopy with Vibrational Molecular Interferometry
Erik T. Garbacik, Jeroen P. Korterik, Cees Otto, Shaul Mukamel, Jennifer L. Herek, and Herman L. Offerhaus
Physical Review Letters   107, 253902 (2011) (4 pages)   
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Extracellular voltage noise probes the interface between retina and silicon chip
Ralf Zeitler, Peter Fromherz, and Günther Zeck
Applied Physics Letters   99, 263702 (2011) (3 pages)   
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DNA hybridization detection in a miniaturized electromagnetic band gap resonator
Mircea Dragoman, Alina Cismaru, Antonio Radoi, Marius Voicu, and Daniela Dragoman
Applied Physics Letters   99, 253106 (2011) (3 pages)   
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Imaging the cellular response to transient shear stress using stroboscopic digital holography
Maciej Antkowiak, Yoshihiko Arita, Kishan Dholakia, and Frank Gunn-Moore
Journal of Biomedical Optics   16, 120508 (2011) (3 pages)   
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Microfluidic device to investigate factors affecting performance in biosensors designed for transdermal applications
Jakub Trzebinski, Sanjiv Sharma, Anna Radomska-Botelho Moniz, Kostis Michelakis, Yangyang Zhang, and Anthony E. G. Cass
Lab on a Chip   12, 348-352 (2012)   
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Self-aligned wet-cell for hydrated microbiology observation in TEM
Tsu-Wei Huang, Shih-Yi Liu, Yun-Ju Chuang, Hsin-Yi Hsieh, Chun-Ying Tsai, Yun-Tzu Huang, Utkur Mirsaidov, Paul Matsudaira, Fan-Gang Tseng, Chia-Shen Chang, and Fu-Rong Chen
Lab on a Chip   12, 340-347 (2012)   
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Johns Hopkins on the chip: microsystems and cognitive machines for sustainable, affordable, personalised medicine and healthcare
A.G. Andreou
Electronics Letters   47, S34-S37 (2011)   
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Semiconductors for early detection and therapy
P. Georgiou and C. Toumazou
Electronics Letters   47, S4-S6 (2011)   
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Effects of cell cycle on the uptake of water soluble quantum dots by cells
Shen Zheng, Ji-Yao Chen, Jun-Yong Wang, Lu-Wei Zhou, and Qian Peng
Journal of Applied Physics   110, 124701 (2011) (6 pages)   
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Molecular Gas Sensing Below Parts Per Trillion: Radiocarbon-Dioxide Optical Detection
I. Galli, S. Bartalini, S. Borri, P. Cancio, D. Mazzotti, P. De Natale, and G. Giusfredi
Physical Review Letters   107, 270802 (2011) (4 pages)   
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Analysis of hysteresis characteristics of silicon nanowire biosensors in aqueous environment
Hyeri Jang, Jieun Lee, Jung Han Lee, Sungmin Seo, Byung-Gook Park, Dong Myong Kim, Dae Hwan Kim, and In-Young Chung
Applied Physics Letters   99, 252103 (2011) (3 pages)   
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Flow-enhanced transient response in whispering gallery mode biosensors
Jason M. Gamba and Richard C. Flagan
Applied Physics Letters   99, 253705 (2011) (3 pages)   
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Direct observation of dynamic force propagation between focal adhesions of cells on microposts by atomic force microscopy
Akinori Okada, Yusuke Mizutani, Agus Subagyo, Hirotaka Hosoi, Motonori Nakamura, Kazuhisa Sueoka, Koichi Kawahara, and Takaharu Okajima
Applied Physics Letters   99, 263703 (2011) (3 pages)   
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Solid-state sensor incorporated in microfluidic chip and magnetic-bead enzyme immobilization approach for creatinine and glucose detection in serum
Yen-Heng Lin, Chien-Hung Chiang, Min-Hsien Wu, Tung-Ming Pan, Ji-Dung Luo, and Chiuan-Chian Chiou
Applied Physics Letters   99, 253704 (2011) (4 pages)   
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Lensless multispectral digital in-line holographic microscope
James P. Ryle, Susan McDonnell, and John T. Sheridan
Journal of Biomedical Optics   16, 126004 (2011) (17 pages)   
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Time-resolved imaging refractometry of microbicidal films using quantitative phase microscopy
Matthew T. Rinehart, Tyler K. Drake, Francisco E. Robles, Lisa C. Rohan, David Katz, and Adam Wax
Journal of Biomedical Optics   16, 120510 (2011) (3 pages)   
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An integrated chip for immunofluorescence and its application to analyze lysosomal storage disorders
Jie Shen, Ying Zhou, Tu Lu, Junya Peng, Zhixiang Lin, Lei Huang, Yuhong Pang, Li Yu, and Yanyi Huang
Lab on a Chip   12, 317-324 (2012)   
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All-silica nanofluidic devices for DNA-analysis fabricated by imprint of sol–gel silica with silicon stamp
Morten Bo Mikkelsen, Alban A. Letailleur, Elin Søndergård, Etienne Barthel, Jérémie Teisseire, Rodolphe Marie, and Anders Kristensen
Lab on a Chip   12, 262-267 (2012)   
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Fabrication of duplex DNA microarrays incorporating methyl-5-cytosine
Christopher L. Warren, Jianfei Zhao, Kimberly Glass, Vikas Rishi, Aseem Z. Ansari, and Charles Vinson
Lab on a Chip   12, 376-380 (2012)   
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Regio selective functionalisation of gold nanoparticles with DNA
Elaine Spain, Brianna Miner, Tia E. Keyes, and Robert J. Forster
Chemical Communications   48, 838-840 (2012)   
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Transient two-dimensional spectroscopy with linear absorption corrections applied to temperature-jump two-dimensional infrared
Kevin C. Jones, Ziad Ganim, Chunte Sam Peng, and Andrei Tokmakoff
Journal of the Optical Society of America B   29, 118-129 (2012)   
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Self-terminating diffraction gates femtosecond X-ray nanocrystallography measurements
Anton Barty, Carl Caleman, Andrew Aquila, Nicusor Timneanu, Lukas Lomb, Thomas A. White, Jakob Andreasson, David Arnlund, Saa Bajt, Thomas R. M. Barends, Miriam Barthelmess, Michael J. Bogan, Christoph Bostedt, John D. Bozek, Ryan Coffee, Nicola Coppola, Jan Davidsson, Daniel P. DePonte, R. Bruce Doak, Tomas Ekeberg, Veit Elser, Sascha W. Epp, Benjamin Erk, Holger Fleckenstein, Lutz Foucar, Petra Fromme, Heinz Graafsma, Lars Gumprecht, Janos Hajdu, Christina Y. Hampton, Robert Hartmann, Andreas Hartmann, Gnter Hauser, Helmut Hirsemann, Peter Holl, Mark S. Hunter, Linda Johansson, Stephan Kassemeyer, Nils Kimmel, Richard A. Kirian, Mengning Liang, Filipe R. N. C. Maia, Erik Malmerberg, Stefano Marchesini, Andrew V. Martin, Karol Nass, Richard Neutze, Christian Reich, Daniel Rolles, Benedikt Rudek, Artem Rudenko, Howard Scott, Ilme Schlichting, Joachim Schulz, M. Marvin Seibert, Robert L. Shoeman, Raymond G. Sierra, Heike Soltau, John C. H. Spence, Francesco Stellato, Stephan Stern, Lothar Strder, Joachim Ullrich, X. Wang, Georg Weidenspointner, Uwe Weierstall, Cornelia B. Wunderer, and Henry N. Chapman
Nature Photonics   6, 35-40 (2011)   
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Graphitic Tribological Layers in Metal-on-Metal Hip Replacements
Y. Liao, R. Pourzal, M. A. Wimmer, J. J. Jacobs, A. Fischer, and L. D. Marks
Science   334, 1687-1690 (2011)   
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Solar hydrogen-producing bionanodevice outperforms natural photosynthesis
Carolyn E. Lubner, Amanda M. Applegate, Philipp Knörzer, Alexander Ganago, Donald A. Bryant, Thomas Happe, and John H. Golbeck
Proceedings of the National Academy of Sciences of the United States of America   108, 20988-20991 (2011)   
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Contribution of a mutational bias in hepatitis C virus replication to the genetic barrier in the development of drug resistance
Megan H. Powdrill, Egor P. Tchesnokov, Robert A. Kozak, Rodney S. Russell, Ross Martin, Evguenia S. Svarovskaia, Hongmei Mo, Roger D. Kouyos, and Matthias Götte
Proceedings of the National Academy of Sciences of the United States of America   108, 20509-20513 (2011)   
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